Papers

PureML: a transparent NumPy-only deep learning framework for teaching and prototyping
Dec 15, 2025

This paper was submitted to the Journal of Open Source Software, and is currently in review.

/pureml-a-transparent-numpy-only-deep-learning-framework-for-teaching-and-prototyping
SAWNERGY: A Python framework for dynamic residue-interaction networks and walk-based embeddings from molecular dynamics simulations
Dec 15, 2025

This paper was submitted to the Journal of Open Source Software. Review is currently pending.

/sawnergy-a-python-framework-for-dynamic-residue-interaction-networks-and-walk-based-embeddings-from-molecular-dynamics-simulations